Mendel’s Genetics[2]: The monohybrid cross

Keywords:

  • Phenotype

Any character (trait) which can be shown to be inherited, such as eye color, leaf shape or an inherited disease, such a cystic fibrosis, is referred to as a phenotype.

Description: A fly may be described as having a red-eyed phenotype. A child may be described as displaying the cystic fibrosis phenotype.

  •  Genotype

The pattern of genes that are responsible for a particular phenotype in a individual is referred to as genotype.

  • Dominance

In hybrids between two individuals displaying different phenotypes, only one phenotype may be observed. This phenotype is referred to as the dominant trait and the un-shown one the recessive.

For instance, if the wife has wide eyes while the husband has small eyes, and their little girl has wide eyes, then the wide eyes are dominant to small eyes.

  •  Pure-breeding lines

Organisms which have been inbred for many generations in which a certain phenotype remain the same.Pedigree breeds of dogs or cats are commonplace examples of pure-breeding lines.

A puppy from two purebred dogs of the same breed, for example, will exhibit the traits of its parents, and not the traits of all breeds in the subject breed’s ancestry.

  • Homozygous: Individuals with two identical copies of a gene.

“True breeding (pure-breedind) organisms are always homozygous for the traits that are to be held constant.”

  • Heterozygous: Individuals with two different copies of the gene.
  • Alleles: The different variants of a gene.

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Mendel made a cross between two pure-breeding lines of pea plants, one of which had violet petals and the other white petals. The hybrids produced in this cross were referred to as the F1 (first filial) generation.

In Mendel’s experiment, the ratio of violet pedals and white ones in the second filial were very close to 3 to 1, which applied to the theoretic reasoning shown above.

He did many other experiments focusing on different types of genotypes of the pea plants and the results were shockingly similar. The hidden phenotype in the first filial reappeared in the second filial and the ratio of the dominant to the recessive phenotype were all close to 3 to 1.

The 3:1 ratio is referred to as the monohybrid ratio and is the basis for all patterns of inheritance in higher organisms.

One simple extension of the 3:1 phenotype ratio is a 1:1 ratio, produced when a heterozygous F1 individual is crossed to the homozygous-recessive parent. The process is known as testcross.

Testcross is useful in any condition when it is necessary to determine whether an individual is heterozygous or homozygous. Conceivable that if F2 all have dominant phenotype, then the tested parent is homozygous-dominant; if F2 have a 1:1 ratio of dominant and recessive phenotype, then the tested parent is heterozygous.

 

IIllustrations of wild animals [insect 3 Odonata]

Before this section, make sure you have read the page introducing classification of insects.(Illustrations of wild animals [insect 1])

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蜻蜓目 ODONATA

Odonata means “toothed jaws,” and indeed the larger species of dragonflies and damseflies may give you a startling but harmless bite.Despite what your mother told you about dragonflies sewing up your lips, they cannot stitch or sting you in any way.

The order Odonata is subdivided into three suborders: Anisoptera, the dragonflies; Zygoptera, the damselflies; and Anisozygoptera, mostly fossilized species with only two known living members.

  • physical features

extremely large eyes (in proportion to its head)

a long, slender abdomen

Large mandibles(jaw), chewing prey quickly and easily, an important feature since these insects tend to eat on the move.

Thorax tilted, positioning the legs just below the mandibles where they function as a prey-catching basket.

“Primitive winged,” ( wings that cannot be folded).  giving Odonates the interesting abilities to hover, fly backward, and take off vertically, similar to a helicopter.

Being able to rotate their heads nearly 360 degrees, giving them an almost limitless field of view.

Dragonflies and damselflies have tiny antennae, so vision is their primary means of navigating and capturing prey.

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Odonate eggs are laid in water, where they hatch into wingless naiads. The naiads have gills, and will molt up to 15 times, depending on the species. Some naiads remain in their aquatic environment for as long as two years before reaching adulthood. The final molt produces functioning wings, and the adult dragonfly or damselfly can hunt over water or land.

  • Habitat and Distribution:

Odonates inhabit every continent except Antarctica, in habitats where fresh water is present. Most species in the order are tropical.

  • Major Families and Superfamilies in the Order:
  1.  Aeshnidae – darners
  2. Gomphidae – clubtails
  3. Libellulidae – common skimmers and chasers
  4. Coenagrionidae – narrow-winged damselflies
  5. Corduliidae – emeralds

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↑Quoted from Order Odonata – Characteristics of Dragonflies and Damselflies By Debbie Hadley

>Learn more about Odonata 

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蜓科  Aeshnidae  (darners)
  1. 黑纹伟蜓 Anax nigrofasciatus
  1. 碧伟蜓 Anax parthenope
春蜓科  Gomphidae (clubtails)

1. 弗鲁戴春蜓 Davidius fruhstorferi

  1. 联纹小叶春蜓 Gomphidia confluens

4. 小团扇春蜓 Ictinogomphus rapax

蜻科  Libellulidae (common skimmers and chasers)

1.  六斑曲缘蜻 Palpopleura sexmaculata

  1. 半黄赤蜻Sympetrum croceolum

3. 夏赤蜻 Sympetrum darwinianum

4. 大黄赤蜻 Sympetrum uniforme

5. 小黄赤蜻Sympetrum kunckeli

6.竖眉赤蜻 Symprtrum eroticum ardens

7. 红蜻 Crocothemis servilia

9. 晓褐蜻 Trithemis aurora

蟌科 Coenagriidae  (narrow-winged damselflies)
  1.  截尾黄蟌 Ceriagrion erubescens

2. 矛斑蟌 Coenagrion lanceolatum

3. 杯斑小蟌 Agriocnemis femina

 

Review of Mendel’s Genetics

Here I found a great page story-telling  Mendel’s Genetics.Can’t be more suitable as a revision of what we learned about genetics and inheritance in high school.  >>Mendel’s Genetics

I believe by reading the link page you have remembered the principles of Mendel’s Genetics. We’ll  summarize these principles again in next posts.

While Mendel’s research was with plants, the basic underlying principles of heredity that he discovered also apply to people and other animals because the mechanisms of heredity are essentially the same for all complex life forms.”

It must be a cliche to summarize the success factors of Mendel’s experiments, but it has to be done, for many of the factors are still important for today’s experimentalists.

Firstly, before the experiment,Mendel spent a long time observing different traits of the peas and decided which traits he was going to focus on in the after experiments. He was prepared, had anticipation and, perhaps already held some hypothesis of what was going to happen.

Then it was the choice of his “lab-rats”. As the link page says,”Mendel picked common garden pea plants for the focus of his research because they can be grown easily in large numbers and their reproduction can be manipulated. ” Based on a large number of offspring, the resulting statistics can be assumed as very close to theoretic  statistics.  In this case, it’s  way more convenient to study the traits of these peas than those of some fragile and rare pole plants. 

More important, “pea plants have both male and female reproductive organs.  As a result, they can either self-pollinate themselves or cross-pollinate with another plant.  In his experiments, Mendel was able to selectively cross-pollinate purebred plants with particular traits and observe the outcome over many generations.  This was the basis for his conclusions about the nature of genetic inheritance.”

Reproductive
structures of
flowers

drawing of a flower cross-section showing both male and female sexual structures
the picture is from http://anthro.palomar.edu

Last but not least, Mendel was a pioneer in applying Math(Statistics) to experiment analysis. He rounded the ratio of numbers of different traits to a whole number and discovered the astonishing similarity of all the results.

In high school that’s all the factors, but actually there’s more. For one, Mendel succeeded because all the genes that controlled traits he picked to observe happened to be on different chromosomes. Otherwise, the  phenomena of “linkage” would have appeared (which we’ll talk about later)and he should never have had such a groundbreaking discovery.

What is molecular biology

Generally speaking, molecular biology is the study of structure and function of macromolecules such as nucleic acids, proteins and other polymers. In a narrow sense, molecular biology focuses on nucleic acids and their activities, such as transcription, translation, DNA replication, recombination, translocation and so on.

Writing in Nature in 1961, William Astbury described molecular biology as:

“…not so much a technique as an approach, an approach from the viewpoint of the so-called basic sciences with the leading idea of searching below the large-scale manifestations of classical biology for the corresponding molecular plan. It is concerned particularly with the forms of biological molecules and […] is predominantly three-dimensional and structural—which does not mean, however, that it is merely a refinement of morphology. It must at the same time inquire into genesis and function.”

Foundation of Molecular Biology:
  • —1869: Discovery of nucleic acids (nuclein) 
  •  —F. Miescher
  • —1944: Proofing of nucleic acids are genetic materials
  • —1953: Proposition of DNA structure – “double helix model”  (Watson and Crick, 1962 Nobel)
  • 1954: Establishment of “central dogma” (—Crick)
  • 1958: Mechanism of DNA replication (Meselson and Stahl)
  • —1961: “Operon” model of gene regulation (Jacob and Monod)
  • —1964: Identification of genetic codes (Nirenberg, 1968 Nobel)

Era of Genetic Engineering

  • —1970: Discovery of reverse transcriptase  (Temin and Baltimore, 1975 Nobel)
  • —1972: First recombinant DNA in vitro (—Berg, 1980 Nobel)
  • —1973: First transformation of hybrid plasmid into E. coli (—Cohen and Boyer)
  • 1977: First genetically modified product (Boyer, somatostatin )
  • 1977: DNA sequencing methods (Sanger and Gilbert, 1980 Nobel)
  • 1985: DNA in vitro amplification technology-PCR)
  • —1970: Discovery of reverse transcriptase (Temin and Baltimore, 1975 Nobel)
  • 1972: First recombinant DNA in vitro (—Berg, 1980 Nobel)
  • —1973: First transformation of hybrid plasmid into E. coli (—Cohen and Boyer)
  • —1977: First genetically modified product (Boyer, somatostatin)
  • —1977: DNA sequencing methods (—Sanger and Gilbert, 1980 Nobel)
  • —1985: DNA in vitro amplification technology-PCR(—Mullis, 1993 Nobel)
Era of Genomics and post-Genomics
  • —1986: Establishment of “Genomics” concept (Dulbecco, Roderick and McKusick)
  • —1990: Human genome project starts (—USA department of energy)
  • —2003: Completion of sequence mapping of human genome (—International HGP organization)
  • —2003-now: functional analysis of genome (post-genomics)

Genome Projects-Current Researches:

  • —Genetic engineering
  1. GMO (Genetically modified organism 基因修饰生物)
  2. —Cancer and gene therapy
  • —Regulation analysis of gene expression
          Signal transduction, TFs, RNA splicing, etc
  • —Structural and functional analysis of biological macromolecules
  1. —X-ray crystallography, NMR, EM etc
  2. —Yeast two-hybrid, immunoprecipitation etc
  • —Genomics, proteomics and bioinformatics
  • —…..

Hotspots

Illustrations of wild animals [insect 2 mayflies]

Before this section, make sure you have read the page introducing classification of insects.(Illustrations of wild animals [insect 1])

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蜉蝣目 EPHEMEROPTERA

Mayflies

The name Ephemeroptera is derived from the Greek “ephemera” meaning short-lived, and “ptera” meaning wings.  This is a reference to the short lifespan of most adult mayflies.

  • Classification & Distribution

    Hemimetabola

    • incomplete development (egg, nymph, adult)
    • immatures are aquatic (naiads)

    Paleoptera

    • primitive wing venation
    • unable to fold the wings over the back

    Distribution:  Common in freshwater habitats worldwide.

    WORLDWIDE
    Number of Families
    19
    Number of Species
    >2000
  • Physical Features
    physical features image
    physical features image
    Immatures
    Adults
    • Antennae short and bristle-like
    • Four to nine pairs of leaf-like or fan-like gills along the sides of the abdomen
    • Three long filaments at rear of abdomen
    • Antennae short and bristle-like
    • Front legs long and often held out in front of body
    • Compound eyes large, usually covering most of the head
    • Wings: four membranous wings with many veins and crossveins front wings large, triangular hind wings smaller, fan-shaped
    • Abdomen slender, bearing two (or sometimes three) long terminal filaments

↑Introduction from John R. Meyer’s Entomology class. see more

  • Classification of mayflies from wikipedia

Suborder Schistonota

Suborder Pannota

  1. 绢蜉 Ephemera serica (蜉蝣科  Ephemeridae)
  1. 蜉蝣 Ephenera sp. (蜉蝣科  Ephemeridae)

 

  1. 红斑似动蜉Cinygmina rubromaculata (扁蜉科  Heptageniidae)

 

4. 高翔蜉Epeorus sp. (扁蜉科  Heptageniidae)

5美丽高翔蜉 Epeorus melli(扁蜉科  Heptageniidae)

6透明假蜉 Iron pellucidus (扁蜉科  Heptageniidae)

7.中国扁蜉 Heptagenia chinensis (Heptageniidae)

8. 桶形赞蜉 Paegniodes cupulatus (扁蜉科  Heptageniidae)

9. 花翅蜉 Baetiella sp (四节蜉科  Baetidae)

Illustrations of Wild Animals [insect1]

First of all we need to know the classification of insects.

The following content is all from http://bijlmakers.com/entomology/classification/Insect_classification.htm, a page I find more than helpful for us to use as the introduction of insects.

Classification of Insects

Taxonomy is the study of the principles of scientific classification. In this page we will learn how insects are classified. First we will see where insects belong in the animal kingdom. Then we will find out how the different insects are sorted in groups.

Use the Glossary to look up some of the technical words or terms.

Classification of animals

界(Kingdon)、门(Phylum)、纲(Class)、目(Order)、科(Family)、属(Genus)、种(Species)

The animal kingdom is divided in a number of groups called “phyla” (singular: phylum). Examples of phyla are:

  • Protozoa (single-celled animals)
  • Porifera (sponges)
  • Nemathelminthes (roundworms)
  • Mollusca (mollusks, snails, etc.)
  • Arthropoda (crayfish, millipedes, centipedes, spiders and insects)
  • Chordata, (fish, amphibians, reptiles, birds, and mammals)

Each phylum is subdivided in classes, for example the class Hexapoda (= insects). Classes are subdivided into orders, for example the order Coleoptera (= beetles). Orders are divided into families, families into genera (singular: genus), and genera are divided into species (See Table 1). Within the class Hexapoda there are over 750,000 different species of insects.

The scientific name of a species is always a double name (the genus name, and a specific name). It should be written with a capital letter in the genus name and either in italics or underlined.

Example: Helicoverpa armigera or Helicoverpa armigera

An example of the classification of an insect:

Kingdom — Animal
     Phylum — Arthropoda
          Class — Hexapoda (= insects)
               Order — Lepidoptera (= butterflies and moths)
                    Family — Noctuidae (= noctuids)
                         Genus — Helicoverpa
                              Species — Helicoverpa armigera (= American bollworm)

The phylum Arthropoda

Some characteristics of the Arthropoda are:

  • They have a so called exoskeleton. They do not have bones, but the hard outer covering supports the muscles.
  • The appendages are jointed.
  • The body is formed of a number of segments.

Characteristics of the class Hexapoda (Insects)

Some characteristics of insects are:

Body:

  • The body is divided into three distinct regions: head, thorax and abdomen

Head:

  • One pair of antennae.
    • The antennae are usually used as tactile organs (= organs pertaining to the sense of touch) or as olfactory organs (= organs of smell).
  • Eyes:
    • Most insects possess one pair of compound eyes and sometimes some simple eyes called “ocelli”.
  • Mouthparts.
    • There is a big variety in types of mouthparts; biting, sucking, stinging, licking, etc.

Thorax:

  • Three pairs of legs.
    • The thorax has three segments. These are called pro-thorax, meso-thorax and meta-thorax. Each segment has one pair of legs. The different parts of the leg are called coxa, trochanter, femur, tibia, and tarsus.
      Note: some insects are legless, or have fewer than 6 legs. Some larvae have leg-like appendages on the abdomen.
  • Often one or two pairs of wings.
    • The wings are borne by the second and/or third of the thoracic segments.
      Note: Some insects are wingless.

Abdomen:

  • The gonopore (genital opening) is at the posterior end of the abdomen.
  • No appendages used for moving on the abdomen of adults (except in a few primitive insects).
  • Sometimes there are some appendages at the end of the abdomen.

Classification of Hexapoda (Insects)

The class hexapoda is divided in two subclasses:

  • Apterygota (= primitive wingless insects)
  • Pterygota (= winged and secondarily wingless insects)

The subclass Pterygota is divided in two divisions:

  • Exopterygota (= insects with a simple metamorphosis, without pupal stage)
  • Endopterygota (= with a complete metamorphosis, including a pupal stage)

Metamorphosis

After hatching from the egg, an insect grows by a series of molts. After shedding the old skin they expand into a new larger one. This molting continues until the adult stage is reached. At each molt, some externally visible changes occur. This type of growing is called metamorphosis. The division of insects into apterygota, exopterygota and endopterygota is mainly based on differences in the type of metamorphosis.

The apterygota have no metamorphosis. Except for the size, all larval stages closely resemble the adults (which are wingless).

The exopterygota undergo a simple metamorphosis. In molting from egg, via the nymphal stages to an adult, there is a gradual change in the external appearance. The late nymphal stages already show the development of wing pads. But only in the last molt functional wings are developed. The nymphs usually have the same feeding habits as the adults.

In the endopterygota there is a complete metamorphosis. In these insects the external (and internal) changes during the life history are the greatest. The eggs hatch into larvae which feed actively during the different instars. The larvae may or may not have legs. The development of wings is not visible during the larval stages. After several molts a pupa is formed. A pupa is an inactive stage, it does not feed and it does not move. Sometimes the pupa is protected by a cocoon of silk, or it is found in an earthen cell in the soil. During this pupal stage big changes take place internally. After the pupal stage, a highly active winged adult appears. Often, the larvae and the adults live in different types of habitat and use different types of food.

Orders of insects

Orders marked with a (*) are important because they contain some agricultural pests.

Click on the links below to see more information about some orders.

Apterygota

Order Thysanura Bristletails
Order Diplura Diplurans (Two-pronged Bristletails)
Order Protura Proturans
Order Collembola Springtails

Exopterygota

Order Ephemeroptera Mayflies
Order Odonata Dragonflies and Damselflies
Order Orthoptera * Grasshoppers, Locusts and Crickets
Order Dictyoptera Cockroaches and Mantids
Order Grylloblattodea Rock crawlers
Order Phasmida Stick insects and Leaf insects
Order Dermaptera Earwigs
Order Isoptera * Termites
Order Embioptera Web-spinners
Order Plecoptera Stoneflies
Order Zoraptera Zorapterans
Order Psocoptera Psocopterans (Psocids, Booklice)
Order Mallophaga Chewing lice (Biting lice)
Order Anoplura
(= Siphunculata)
Sucking lice
Order Thysanoptera * Thrips
Order Hemiptera
   suborder Heteroptera * Bugs
   suborder Homoptera * Cicadas, Hoppers, Psyllids, Whiteflies, Aphids, and Scale insects

Endopterygota

Order Neuroptera Alderflies, Dobsonflies, Fishflies, Snakeflies, Lacewings, Antlions, and Owlflies
Order Coleoptera * Beetles
Order Strepsiptera Twisted-winged parasites (Stylopids)
Order Mecoptera Scorpionflies
Order Trichoptera Caddisflies
Order Lepidoptera * Butterflies and Moths
Order Diptera * True Flies
Order Siphonaptera Fleas
Order Hymenoptera * Sawflies, Ichneumons, Chalcids, Ants, Wasps, and Bees

Identifying insects

When trying to identify an unknown insect you will always first try to determine its correct Order. This can be done with the help of a key. You will need a good hand lens to observe some of the smaller parts of the insect, for example to count the number of segments in the tarsi, or to have a close look at the antennae. Click here to learn more about using a key to identify insect orders.

Good, Bad or Neutral?

We have just seen how insects can be classified in different orders. But there are other ways of grouping insects for example from the farmers’ point of view. Farmers will usually classify insects in 3 groups, depending on their behavior in the farm:

  • Pests
  • Beneficial insects
  • Neutral insects

Pest
Whether an insect species is a pest depends on the situation. A definition of “pest” is: animals causing damage or annoyance to man, his animals, crops or possessions, such as insects, mites, nematodes, rodents, birds. This means that a certain insect could be a pest in one situation, but the same insect would be neutral in another situation. For example the caterpillars of Diamondback moth (Plutella xylostella) feed on cabbage and other plants of the Cruciferae family. A farmer who grows cauliflower or kale will therefore consider it a pest. But for a farmer who grows potatoes or bananas the Diamondback moth is an innocent, neutral insect. As humans we have adapted the nickname pest for other things as well. Let’s say you were looking at apartments and the neighbors around you were making so much noise at all the apartments you checked out. Those people would be called pests and it might change your mind on choosing that apartment.

Beneficial insects
Some insects are beneficial to the farmer, because they are the natural enemies of other insects. Predatory insects feed on other insects and in this way they help control pest insects. For example the Assassin bug kills caterpillars and Ladybird beetles feed on aphids. Other insects are beneficial because they help with the pollination of plants, e.g. bees and bumble bees. There are insects that produce useful products, for example honey (honey bee) or silk (silkworm). And in many countries insects are used as food.

Neutral insects
If an insect is not a pest and not beneficial than we can call it neutral. But again, it really depends on the context. In a rice field a mosquito can be considered a neutral insect (it doesn’t harm the crop), but in your bedroomyou will call it a pest.