What is molecular biology

Generally speaking, molecular biology is the study of structure and function of macromolecules such as nucleic acids, proteins and other polymers. In a narrow sense, molecular biology focuses on nucleic acids and their activities, such as transcription, translation, DNA replication, recombination, translocation and so on.

Writing in Nature in 1961, William Astbury described molecular biology as:

“…not so much a technique as an approach, an approach from the viewpoint of the so-called basic sciences with the leading idea of searching below the large-scale manifestations of classical biology for the corresponding molecular plan. It is concerned particularly with the forms of biological molecules and […] is predominantly three-dimensional and structural—which does not mean, however, that it is merely a refinement of morphology. It must at the same time inquire into genesis and function.”

Foundation of Molecular Biology:
  • —1869: Discovery of nucleic acids (nuclein) 
  •  —F. Miescher
  • —1944: Proofing of nucleic acids are genetic materials
  • —1953: Proposition of DNA structure – “double helix model”  (Watson and Crick, 1962 Nobel)
  • 1954: Establishment of “central dogma” (—Crick)
  • 1958: Mechanism of DNA replication (Meselson and Stahl)
  • —1961: “Operon” model of gene regulation (Jacob and Monod)
  • —1964: Identification of genetic codes (Nirenberg, 1968 Nobel)

Era of Genetic Engineering

  • —1970: Discovery of reverse transcriptase  (Temin and Baltimore, 1975 Nobel)
  • —1972: First recombinant DNA in vitro (—Berg, 1980 Nobel)
  • —1973: First transformation of hybrid plasmid into E. coli (—Cohen and Boyer)
  • 1977: First genetically modified product (Boyer, somatostatin )
  • 1977: DNA sequencing methods (Sanger and Gilbert, 1980 Nobel)
  • 1985: DNA in vitro amplification technology-PCR)
  • —1970: Discovery of reverse transcriptase (Temin and Baltimore, 1975 Nobel)
  • 1972: First recombinant DNA in vitro (—Berg, 1980 Nobel)
  • —1973: First transformation of hybrid plasmid into E. coli (—Cohen and Boyer)
  • —1977: First genetically modified product (Boyer, somatostatin)
  • —1977: DNA sequencing methods (—Sanger and Gilbert, 1980 Nobel)
  • —1985: DNA in vitro amplification technology-PCR(—Mullis, 1993 Nobel)
Era of Genomics and post-Genomics
  • —1986: Establishment of “Genomics” concept (Dulbecco, Roderick and McKusick)
  • —1990: Human genome project starts (—USA department of energy)
  • —2003: Completion of sequence mapping of human genome (—International HGP organization)
  • —2003-now: functional analysis of genome (post-genomics)

Genome Projects-Current Researches:

  • —Genetic engineering
  1. GMO (Genetically modified organism 基因修饰生物)
  2. —Cancer and gene therapy
  • —Regulation analysis of gene expression
          Signal transduction, TFs, RNA splicing, etc
  • —Structural and functional analysis of biological macromolecules
  1. —X-ray crystallography, NMR, EM etc
  2. —Yeast two-hybrid, immunoprecipitation etc
  • —Genomics, proteomics and bioinformatics
  • —…..

Hotspots

Illustrations of wild animals [insect 2 mayflies]

Before this section, make sure you have read the page introducing classification of insects.(Illustrations of wild animals [insect 1])

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蜉蝣目 EPHEMEROPTERA

Mayflies

The name Ephemeroptera is derived from the Greek “ephemera” meaning short-lived, and “ptera” meaning wings.  This is a reference to the short lifespan of most adult mayflies.

  • Classification & Distribution

    Hemimetabola

    • incomplete development (egg, nymph, adult)
    • immatures are aquatic (naiads)

    Paleoptera

    • primitive wing venation
    • unable to fold the wings over the back

    Distribution:  Common in freshwater habitats worldwide.

    WORLDWIDE
    Number of Families
    19
    Number of Species
    >2000
  • Physical Features
    physical features image
    physical features image
    Immatures
    Adults
    • Antennae short and bristle-like
    • Four to nine pairs of leaf-like or fan-like gills along the sides of the abdomen
    • Three long filaments at rear of abdomen
    • Antennae short and bristle-like
    • Front legs long and often held out in front of body
    • Compound eyes large, usually covering most of the head
    • Wings: four membranous wings with many veins and crossveins front wings large, triangular hind wings smaller, fan-shaped
    • Abdomen slender, bearing two (or sometimes three) long terminal filaments

↑Introduction from John R. Meyer’s Entomology class. see more

  • Classification of mayflies from wikipedia

Suborder Schistonota

Suborder Pannota

  1. 绢蜉 Ephemera serica (蜉蝣科  Ephemeridae)
  1. 蜉蝣 Ephenera sp. (蜉蝣科  Ephemeridae)

 

  1. 红斑似动蜉Cinygmina rubromaculata (扁蜉科  Heptageniidae)

 

4. 高翔蜉Epeorus sp. (扁蜉科  Heptageniidae)

5美丽高翔蜉 Epeorus melli(扁蜉科  Heptageniidae)

6透明假蜉 Iron pellucidus (扁蜉科  Heptageniidae)

7.中国扁蜉 Heptagenia chinensis (Heptageniidae)

8. 桶形赞蜉 Paegniodes cupulatus (扁蜉科  Heptageniidae)

9. 花翅蜉 Baetiella sp (四节蜉科  Baetidae)

Illustrations of Wild Animals [insect1]

First of all we need to know the classification of insects.

The following content is all from http://bijlmakers.com/entomology/classification/Insect_classification.htm, a page I find more than helpful for us to use as the introduction of insects.

Classification of Insects

Taxonomy is the study of the principles of scientific classification. In this page we will learn how insects are classified. First we will see where insects belong in the animal kingdom. Then we will find out how the different insects are sorted in groups.

Use the Glossary to look up some of the technical words or terms.

Classification of animals

界(Kingdon)、门(Phylum)、纲(Class)、目(Order)、科(Family)、属(Genus)、种(Species)

The animal kingdom is divided in a number of groups called “phyla” (singular: phylum). Examples of phyla are:

  • Protozoa (single-celled animals)
  • Porifera (sponges)
  • Nemathelminthes (roundworms)
  • Mollusca (mollusks, snails, etc.)
  • Arthropoda (crayfish, millipedes, centipedes, spiders and insects)
  • Chordata, (fish, amphibians, reptiles, birds, and mammals)

Each phylum is subdivided in classes, for example the class Hexapoda (= insects). Classes are subdivided into orders, for example the order Coleoptera (= beetles). Orders are divided into families, families into genera (singular: genus), and genera are divided into species (See Table 1). Within the class Hexapoda there are over 750,000 different species of insects.

The scientific name of a species is always a double name (the genus name, and a specific name). It should be written with a capital letter in the genus name and either in italics or underlined.

Example: Helicoverpa armigera or Helicoverpa armigera

An example of the classification of an insect:

Kingdom — Animal
     Phylum — Arthropoda
          Class — Hexapoda (= insects)
               Order — Lepidoptera (= butterflies and moths)
                    Family — Noctuidae (= noctuids)
                         Genus — Helicoverpa
                              Species — Helicoverpa armigera (= American bollworm)

The phylum Arthropoda

Some characteristics of the Arthropoda are:

  • They have a so called exoskeleton. They do not have bones, but the hard outer covering supports the muscles.
  • The appendages are jointed.
  • The body is formed of a number of segments.

Characteristics of the class Hexapoda (Insects)

Some characteristics of insects are:

Body:

  • The body is divided into three distinct regions: head, thorax and abdomen

Head:

  • One pair of antennae.
    • The antennae are usually used as tactile organs (= organs pertaining to the sense of touch) or as olfactory organs (= organs of smell).
  • Eyes:
    • Most insects possess one pair of compound eyes and sometimes some simple eyes called “ocelli”.
  • Mouthparts.
    • There is a big variety in types of mouthparts; biting, sucking, stinging, licking, etc.

Thorax:

  • Three pairs of legs.
    • The thorax has three segments. These are called pro-thorax, meso-thorax and meta-thorax. Each segment has one pair of legs. The different parts of the leg are called coxa, trochanter, femur, tibia, and tarsus.
      Note: some insects are legless, or have fewer than 6 legs. Some larvae have leg-like appendages on the abdomen.
  • Often one or two pairs of wings.
    • The wings are borne by the second and/or third of the thoracic segments.
      Note: Some insects are wingless.

Abdomen:

  • The gonopore (genital opening) is at the posterior end of the abdomen.
  • No appendages used for moving on the abdomen of adults (except in a few primitive insects).
  • Sometimes there are some appendages at the end of the abdomen.

Classification of Hexapoda (Insects)

The class hexapoda is divided in two subclasses:

  • Apterygota (= primitive wingless insects)
  • Pterygota (= winged and secondarily wingless insects)

The subclass Pterygota is divided in two divisions:

  • Exopterygota (= insects with a simple metamorphosis, without pupal stage)
  • Endopterygota (= with a complete metamorphosis, including a pupal stage)

Metamorphosis

After hatching from the egg, an insect grows by a series of molts. After shedding the old skin they expand into a new larger one. This molting continues until the adult stage is reached. At each molt, some externally visible changes occur. This type of growing is called metamorphosis. The division of insects into apterygota, exopterygota and endopterygota is mainly based on differences in the type of metamorphosis.

The apterygota have no metamorphosis. Except for the size, all larval stages closely resemble the adults (which are wingless).

The exopterygota undergo a simple metamorphosis. In molting from egg, via the nymphal stages to an adult, there is a gradual change in the external appearance. The late nymphal stages already show the development of wing pads. But only in the last molt functional wings are developed. The nymphs usually have the same feeding habits as the adults.

In the endopterygota there is a complete metamorphosis. In these insects the external (and internal) changes during the life history are the greatest. The eggs hatch into larvae which feed actively during the different instars. The larvae may or may not have legs. The development of wings is not visible during the larval stages. After several molts a pupa is formed. A pupa is an inactive stage, it does not feed and it does not move. Sometimes the pupa is protected by a cocoon of silk, or it is found in an earthen cell in the soil. During this pupal stage big changes take place internally. After the pupal stage, a highly active winged adult appears. Often, the larvae and the adults live in different types of habitat and use different types of food.

Orders of insects

Orders marked with a (*) are important because they contain some agricultural pests.

Click on the links below to see more information about some orders.

Apterygota

Order Thysanura Bristletails
Order Diplura Diplurans (Two-pronged Bristletails)
Order Protura Proturans
Order Collembola Springtails

Exopterygota

Order Ephemeroptera Mayflies
Order Odonata Dragonflies and Damselflies
Order Orthoptera * Grasshoppers, Locusts and Crickets
Order Dictyoptera Cockroaches and Mantids
Order Grylloblattodea Rock crawlers
Order Phasmida Stick insects and Leaf insects
Order Dermaptera Earwigs
Order Isoptera * Termites
Order Embioptera Web-spinners
Order Plecoptera Stoneflies
Order Zoraptera Zorapterans
Order Psocoptera Psocopterans (Psocids, Booklice)
Order Mallophaga Chewing lice (Biting lice)
Order Anoplura
(= Siphunculata)
Sucking lice
Order Thysanoptera * Thrips
Order Hemiptera
   suborder Heteroptera * Bugs
   suborder Homoptera * Cicadas, Hoppers, Psyllids, Whiteflies, Aphids, and Scale insects

Endopterygota

Order Neuroptera Alderflies, Dobsonflies, Fishflies, Snakeflies, Lacewings, Antlions, and Owlflies
Order Coleoptera * Beetles
Order Strepsiptera Twisted-winged parasites (Stylopids)
Order Mecoptera Scorpionflies
Order Trichoptera Caddisflies
Order Lepidoptera * Butterflies and Moths
Order Diptera * True Flies
Order Siphonaptera Fleas
Order Hymenoptera * Sawflies, Ichneumons, Chalcids, Ants, Wasps, and Bees

Identifying insects

When trying to identify an unknown insect you will always first try to determine its correct Order. This can be done with the help of a key. You will need a good hand lens to observe some of the smaller parts of the insect, for example to count the number of segments in the tarsi, or to have a close look at the antennae. Click here to learn more about using a key to identify insect orders.

Good, Bad or Neutral?

We have just seen how insects can be classified in different orders. But there are other ways of grouping insects for example from the farmers’ point of view. Farmers will usually classify insects in 3 groups, depending on their behavior in the farm:

  • Pests
  • Beneficial insects
  • Neutral insects

Pest
Whether an insect species is a pest depends on the situation. A definition of “pest” is: animals causing damage or annoyance to man, his animals, crops or possessions, such as insects, mites, nematodes, rodents, birds. This means that a certain insect could be a pest in one situation, but the same insect would be neutral in another situation. For example the caterpillars of Diamondback moth (Plutella xylostella) feed on cabbage and other plants of the Cruciferae family. A farmer who grows cauliflower or kale will therefore consider it a pest. But for a farmer who grows potatoes or bananas the Diamondback moth is an innocent, neutral insect. As humans we have adapted the nickname pest for other things as well. Let’s say you were looking at apartments and the neighbors around you were making so much noise at all the apartments you checked out. Those people would be called pests and it might change your mind on choosing that apartment.

Beneficial insects
Some insects are beneficial to the farmer, because they are the natural enemies of other insects. Predatory insects feed on other insects and in this way they help control pest insects. For example the Assassin bug kills caterpillars and Ladybird beetles feed on aphids. Other insects are beneficial because they help with the pollination of plants, e.g. bees and bumble bees. There are insects that produce useful products, for example honey (honey bee) or silk (silkworm). And in many countries insects are used as food.

Neutral insects
If an insect is not a pest and not beneficial than we can call it neutral. But again, it really depends on the context. In a rice field a mosquito can be considered a neutral insect (it doesn’t harm the crop), but in your bedroomyou will call it a pest.

The Sea Around Us_Rachel Carson

World consumption of paper has grown 400 percent in the last 40 years. Now nearly 4 billion trees or 35 percent of the total trees cut around the world are used in paper industries on every continent.(source)

For the trees’ sake, please please please please use e-books!

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Rachel L.Carson, most famous for her Silent Spring,  also completed many other excellent books on environmental conservation.sea around us

 

As an aquatic biologist early in her career, Rachel explored and admired the mystery of the seas with  brain of a scientist. While as a woman worshiped the nature, she explored it with eyes of a sincere admirer.

As a gifted writer, Rachel whispered to us about the sea in the most beautiful descriptions, leading us to the seasons of an strange but engaging world. As a concerned scientist, she sharply stated the harm human activities did to the seas in a serious voice, making us think, facing disruptions of the ecosystem, what is the right thing to do.

Though the book was written in the 1950s and some of the statistics and facts might have been renewed, it is still a must-read book for everyone.

The sea is powerful but also fragile, is beautiful but her beauty could be forever ruined if we don’t start paying attention to the aquatic protection and restoration. 

An Inconvenient Truth: film and book

     An inconvenient truth is a documentary  film directed by Guggenheim. The 2006 movie is based on former Vice President of the U.S Al Gore’s lecture tour in which he educated citizens about Global Warming. Winning two Academy Awards for  best documentary feature and best original  song, the movies is a great success. 

       To me, whether it gained public popularity  doesn’t matter. The movie has its unique  educating meaning and I recommend that  everyone should watch it. 

       Global Warming is not a rumor. It’s time we  stop ignoring this fact.

     The book An inconvenient truth: the Planetary Emergency of Global Warming And What We Can Do About It written by Al Gore was also published in 2006.

(World consumption of paper has grown 400 percent in the last 40 years. Now nearly 4 billion trees or 35 percent of the total trees cut around the world are used in paper industries on every continent.(source)

For the trees’ sake, please please please please use e-books!)